Allele Frequencies in World Populations

HLA > Haplotype Frequency Search

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Population:  Country:  Source of dataset : 
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Sample Size:      Sample Year:     Loci Tested: 
Displaying 1 to 71 (from 71) records   Pages: 1 of 1  

Line Haplotype Population Frequency (%) Sample Size Distribution¹
 1  B*39:08-C*07:02  Mexico Oaxaca Zapotec 2.200090
 2  A*68:03-B*39:08-DRB1*08:02  Mexico Mixtec 2.100097
 3  A*68:03-B*39:08-DRB1*08:02  Mexico Oaxaca Jamiltepec Mixtec 2.080096
 4  A*02:01:01-B*39:08-C*07:02:01-DRB1*04:07  Costa Rica Amerindians (G) 1.9962125
 5  B*39:08-C*07:02  Mexico Oaxaca Mixtec 1.0000103
 6  A*68:07-B*39:08-C*07:02:01-DRB1*14:02-DQB1*03:01  Costa Rica Central Valley Mestizo (G) 0.9050221
 7  B*39:08-C*07:02  Mexico Mexico City Mestizo pop 2 0.6400234
 8  A*68:01-B*39:08-DRB1*08:02  Mexico Oaxaca Jamiltepec Mixtec 0.520096
 9  A*02:06-B*39:08-C*07:02-DRB1*04:07-DQA1*03:01-DQB1*03:02-DPA1*01:03-DPB1*04:02  Mexico Chiapas Lacandon Mayans 0.4587218
 10  A*68:01:02-B*39:08-C*07:02:01-DRB1*08:02:01-DQB1*04:02:01  Costa Rica Central Valley Mestizo (G) 0.4525221
 11  A*68:01-B*39:08-C*07:02-DRB1*04:07-DQA1*03:01-DQB1*03:02-DPB1*04:02  Nicaragua Managua 0.4329339
 12  B*39:08-C*07:02-DRB1*04:07-DQB1*03:02  Mexico Mexico City Mestizo pop 2 0.4300234
 13  A*24:02:01-B*39:08-C*03:04:01-DRB1*08:02:01  Costa Rica Amerindians (G) 0.4080125
 14  A*68:03-B*39:08-C*07:17-DRB1*08:02-DQB1*04:02  Mexico Mexico City Mestizo population 0.3497143
 15  B*39:08-C*07:17  Mexico Mexico City Mestizo population 0.3497143
 16  B*39:08-C*07:17-DRB1*08:02-DQB1*04:02  Mexico Mexico City Mestizo population 0.3497143
 17  A*02:01:01-B*39:08-C*07:02:01-DRB1*01:02:01  Nicaragua Mestizo (G) 0.3226155
 18  A*02:01:01-B*39:08-C*07:02:01-DRB1*14:06:01  Nicaragua Mestizo (G) 0.3226155
 19  A*02:05:01-B*39:08-C*07:02:01-DRB1*08:02:01  Nicaragua Mestizo (G) 0.3226155
 20  A*30:02:01-B*39:08-C*07:01:01-DRB1*08:02:01  Nicaragua Mestizo (G) 0.3226155
 21  A*30:02:01-B*39:08-C*07:02:01-DRB1*14:06:01  Nicaragua Mestizo (G) 0.3226155
 22  A*31:01:02-B*39:08-C*07:02:01-DRB1*04:07  Nicaragua Mestizo (G) 0.3226155
 23  A*68:07-B*39:08-C*07:02:01-DRB1*09:01:02  Nicaragua Mestizo (G) 0.3226155
 24  A*02:06-B*39:08-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*04:02  Mexico Chiapas Lacandon Mayans 0.2294218
 25  A*24:02-B*39:08-C*07:02-DRB1*04:07-DQA1*03:01-DQB1*03:02-DPA1*01:03-DPB1*04:02  Mexico Chiapas Lacandon Mayans 0.2294218
 26  A*24:02-B*39:08-C*07:02-DRB1*14:02-DQA1*05:03-DQB1*03:01-DPA1*01:03-DPB1*04:02  Mexico Chiapas Lacandon Mayans 0.2294218
 27  A*31:01-B*39:08-C*07:02-DRB1*04:07-DQA1*03:03-DQB1*03:02-DPA1*01:03-DPB1*04:02  Mexico Chiapas Lacandon Mayans 0.2294218
 28  A*02:01:01-B*39:08-C*07:02:01-DRB1*04:10:01-DQB1*04:02:01  Costa Rica Central Valley Mestizo (G) 0.2262221
 29  A*02:01:01-B*39:08-C*07:02:01-DRB1*13:02:01-DQB1*06:04  Costa Rica Central Valley Mestizo (G) 0.2262221
 30  A*24:02:01-B*39:08-C*07:02:01-DRB1*04:10:01-DQB1*04:02:01  Costa Rica Central Valley Mestizo (G) 0.2262221
 31  A*30:02:01-B*39:08-C*04:01:01-DRB1*01:02:01-DQB1*05:01  Costa Rica Central Valley Mestizo (G) 0.2262221
 32  A*03:01-B*39:08-C*07:02-DRB1*04:05-DQA1*03:01-DQB1*04:02-DPB1*04:02  Nicaragua Managua 0.2165339
 33  A*68:01-B*39:08-C*07:02-DRB1*04:01-DQA1*03:01-DQB1*03:02-DPB1*04:02  Nicaragua Managua 0.2165339
 34  A*68:03-B*39:08-C*07:02-DRB1*04:07-DQA1*03:01-DQB1*03:02-DPB1*04:02  Nicaragua Managua 0.2165339
 35  A*68:03-B*39:08-C*07:17-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPB1*03:01  Nicaragua Managua 0.2165339
 36  A*68:07-B*39:08-C*07:02-DRB1*01:02-DQA1*05:01-DQB1*05:01-DPB1*04:02  Nicaragua Managua 0.2165339
 37  A*02:06-B*39:08-C*15:02-DRB1*16:11-DQB1*03:01-DPB1*04:02  Panama 0.1900462
 38  A*23:01-B*39:08-C*02:10-DRB1*04:01-DQB1*04:02-DPB1*04:01  Panama 0.1900462
 39  A*24:02-B*39:08-C*07:02-DRB1*04:05-DQB1*04:02-DPB1*14:01  Panama 0.1900462
 40  A*31:01-B*39:08-C*04:01-DRB1*04:10-DQB1*04:02-DPB1*14:01  Panama 0.1900462
 41  B*39:08-C*07:02  USA Hispanic pop 2 0.17601,999
 42  A*02:01:01-B*39:08-C*07:02:01-DRB1*08:02:01  Costa Rica Amerindians (G) 0.1116125
 43  A*02:01-B*39:08  USA Hispanic pop 2 0.10101,999
 44  A*68:05-B*39:08-C*07:02-DRB1*04:07-DQB1*03:02  USA Hispanic pop 2 0.09401,999
 45  A*02:06:01-B*39:08-C*06:02:01-DRB1*15:01-DQB1*05:01  Costa Rica Central Valley Mestizo (G) 0.0911221
 46  A*11:01:01-B*39:08-C*07:04:01-DRB1*11:01-DQB1*06:02  Costa Rica Central Valley Mestizo (G) 0.0876221
 47  A*11:01:01-B*39:08-C*07:04:01-DRB1*11:01-DQB1*06:03  Costa Rica Central Valley Mestizo (G) 0.0766221
 48  A*68:05-B*39:08  USA Hispanic pop 2 0.07601,999
 49  A*02:06:01-B*39:08-C*06:02:01-DRB1*15:01-DQB1*03:02  Costa Rica Central Valley Mestizo (G) 0.0723221
 50  A*24:14-B*39:08-C*07:02-DRB1*14:02-DQB1*03:01  Colombia Bogotá Cord Blood 0.06841,463
 51  A*02:06:01-B*39:08-C*06:02:01-DRB1*15:01-DQB1*06:02  Costa Rica Central Valley Mestizo (G) 0.0628221
 52  A*24:02-B*39:08-C*07:02-DRB1*04:10-DQB1*04:02  Colombia Bogotá Cord Blood 0.05671,463
 53  A*11:01:01-B*39:08-C*07:04:01-DRB1*11:01-DQB1*03:01  Costa Rica Central Valley Mestizo (G) 0.0511221
 54  B*39:08-C*07:17  USA Hispanic pop 2 0.05001,999
 55  A*02:01-B*39:08-C*07:02-DRB1*04:04-DQB1*03:02  USA Hispanic pop 2 0.04701,999
 56  A*02:01-B*39:08-C*07:17-DRB1*04:10-DQB1*04:02  USA Hispanic pop 2 0.04701,999
 57  A*68:03-B*39:08-C*07:02-DRB1*04:07-DQB1*03:02  USA Hispanic pop 2 0.04701,999
 58  A*68:07-B*39:08-C*07:02-DRB1*04:03-DQB1*03:02  USA Hispanic pop 2 0.04701,999
 59  A*24:14-B*39:08-C*07:02-DRB1*04:10-DQB1*04:02  Colombia Bogotá Cord Blood 0.04581,463
 60  A*02:01-B*39:08-C*07:02-DRB1*16:02-DQB1*03:01  Colombia Bogotá Cord Blood 0.03421,463
 61  A*02:22-B*39:08-C*07:02-DRB1*04:07-DQB1*03:02  Colombia Bogotá Cord Blood 0.03421,463
 62  A*02:22-B*39:08-C*07:02-DRB1*11:01-DQB1*03:01  Colombia Bogotá Cord Blood 0.03421,463
 63  A*24:14-B*39:08-C*07:02-DRB1*08:02-DQB1*04:02  Colombia Bogotá Cord Blood 0.03421,463
 64  A*32:01-B*39:08-C*07:02-DRB1*04:05-DQB1*04:02  Colombia Bogotá Cord Blood 0.03421,463
 65  A*33:03-B*39:08-C*07:02-DRB1*14:02-DQB1*03:01  Colombia Bogotá Cord Blood 0.03421,463
 66  A*68:01-B*39:08-C*07:02-DRB1*04:07-DQB1*03:02  Colombia Bogotá Cord Blood 0.03421,463
 67  A*68:03-B*39:08  USA Hispanic pop 2 0.02501,999
 68  A*68:07-B*39:08  USA Hispanic pop 2 0.02501,999
 69  A*02:01-B*39:08-C*07:02-DRB1*04:07-DQB1*03:02  USA Hispanic pop 2 0.02301,999
 70  A*02:01-B*39:08-C*07:02-DRB1*04:11-DQB1*04:02  USA Hispanic pop 2 0.02301,999
 71  A*11:01:01-B*39:08-C*07:04:01-DRB1*11:01-DQB1*05:01  Costa Rica Central Valley Mestizo (G) 0.0109221

Notes:

* Haplotype Frequencies: Total number of copies of the haplotype in the population sample (Haplotypes / 2n) shown in percentages (%).
   Important: This field has been expanded to two decimals to better represent frequencies of large datasets (e.g. where sample size > 1000 individuals)
¹ Distribution - Shows the geographic distribution in overlaid maps of the complete haplotype (left icon) or the input alleles if low level resolution was entered (right icon).




   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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