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Gambia pop 3

Polymorphic Region:

Demographic Data

  Ethnic origin: Black
  Geographic Region: Sub-Saharan Africa
  Latitude: 13º 0' N
  Longitude: 16º 0' W
  Family: Parents live at same location
  Urban/Rural: Rural

Sample Data

  Sample Size: 939 (DPB1 = 929, DQB1 = 721, DRB1 = 916)
  Test date: 2019
  Method(s): NGS
  Source: Disease Study Patients
  Loci typed: DPB1, DQB1, DRB1
  Additional notes: -

Bibliographic Reference

  Author(s): Martin Holland
  Publication details: Temporal cytokine gene expression patterns in subjects with trachoma identify distinct conjunctival responses associated with infection, Clin Exp Immunol 2005Conjunctival FOXP3 expression in trachoma: Do regulatory T cells have a role in human ocular Chlamydia trachomatis infection? PloS Med 2006Conjunctival Scarring in Trachoma is Associated with the HLA-C ligand of KIR and is exacerbated by heterozygosity at KIR2DL2/KIR2DL3, PloS NTDs 2014
  Author's e-mail:

Frequency Data

Allele Frequencies Haplotype Frequencies 


Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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