Line |
Haplotype |
Population |
Frequency (%) |
Sample Size |
Distribution¹ |
1 | A*31:01-B*39:01-C*08:03-DRB1*16:02-DQA1*05:05-DQB1*03:01 | | Brazil Puyanawa | 5.9180 | | 150 |
|
2 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Oaxaca, Oaxaca city | 3.9735 | | 151 |
|
3 | A*02-B*39-DRB1*16:02-DQA1*05-DQB1*03:01 | | Mexico Mazatecan | 3.3000 | | 89 |
|
4 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz, Coatzacoalcos | 2.6786 | | 55 |
|
5 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Jalisco, Tlaquepaque | 2.5641 | | 39 |
|
6 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Puebla Mestizo | 2.5000 | | 99 |
|
7 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Oaxaca Rural | 2.4641 | | 485 |
|
8 | A*01:01:01-B*39:09:01-C*01:02:01-DRB1*16:02:01-DQB1*03:01:01-DPA1*01:03:01-DPB1*11:01:01 | | Brazil Barra Mansa Rio State Black | 2.3810 | | 73 |
|
9 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Guanajuato, Guanajuato city | 2.2727 | | 22 |
|
10 | A*24:02-B*39:02-C*07:02-DRB1*16:02-DQA1*05:05-DQB1*03:01 | | Mexico Chichen Itza Maya (prehispanic) | 2.1277 | | 47 |
|
11 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz, Cordoba | 1.7857 | | 56 |
|
12 | A*31:01-B*39:01-C*08:01-DRB1*16:02-DQA1*05:05-DQB1*03:01 | | Brazil Puyanawa | 1.7486 | | 150 |
|
13 | A*31:01-B*39:05-C*08:03-DRB1*16:02-DQA1*05:05-DQB1*03:01 | | Brazil Puyanawa | 1.7486 | | 150 |
|
14 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico San Luis Potosi Rural | 1.7241 | | 87 |
|
15 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz, Orizaba | 1.6667 | | 60 |
|
16 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Tlaxcala, Tlaxcala city | 1.6575 | | 181 |
|
17 | A*31:01-B*39:05-C*08:01-DRB1*16:02-DQA1*05:05-DQB1*03:01 | | Brazil Puyanawa | 1.5847 | | 150 |
|
18 | A*02:01-B*39:09-DRB1*16:02-DQB1*03:01 | | Chile Mapuche | 1.5400 | | 66 |
|
19 | A*24:02-B*39:01-DRB1*16:02-DQB1*03:01 | | Chile Mapuche | 1.5400 | | 66 |
|
20 | A*68:01-B*39:09-DRB1*16:02-DQB1*03:01 | | Chile Mapuche | 1.5400 | | 66 |
|
21 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Sonora, Hermosillo | 1.5152 | | 99 |
|
22 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Mexico City West | 1.4706 | | 33 |
|
23 | A*02:01-B*39:01-DRB1*16:02:01-DQB1*03:01 | | USA South Dakota Lakota Sioux | 1.4000 | | 302 |
|
24 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Guerrero state | 1.3889 | | 144 |
|
25 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Coahuila, Saltillo | 1.3699 | | 72 |
|
26 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Nuevo Leon Rural | 1.3636 | | 439 |
|
27 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz, Xalapa | 1.3369 | | 187 |
|
28 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Puebla, Puebla city | 1.3277 | | 1,994 |
|
29 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Nuevo Leon, Monterrey city | 1.3274 | | 226 |
|
30 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Mexico City Metropolitan Area Rural | 1.3158 | | 150 |
|
31 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Mexico City Center | 1.2987 | | 152 |
|
32 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Jalisco, Tlaquepaque | 1.2821 | | 39 |
|
33 | A*24-B*39-DRB1*16-DQB1*03:01 | | Ecuador Amazonia Mixed Ancestry | 1.2821 | | 39 |
|
34 | A*68-B*39-DRB1*16:02-DQB1*03:01 | | Mexico San Vicente Tancuayalab Teenek/Huastecos | 1.2400 | | 53 |
|
35 | A*31-B*39-DRB1*16-DQB1*03:01 | | Mexico Hidalgo, Pachuca | 1.2195 | | 41 |
|
36 | A*02:04-B*39:05-C*07:02-DRB1*16:02-DQA1*05:01-DQB1*03:01-DPA1*01-DPB1*04:02 | | Venezuela Sierra de Perija Yucpa | 1.2000 | | 73 |
|
37 | A*68-B*39-DRB1*16:02-DQB1*03:01 | | Colombia San Basilio de Palenque | 1.1910 | | 42 |
|
38 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz, Veracruz city | 1.1628 | | 171 |
|
39 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Queretaro, Queretaro city | 1.1111 | | 45 |
|
40 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Campeche Rural | 1.0638 | | 47 |
|
41 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Aguascalientes state | 1.0526 | | 95 |
|
42 | A*02-B*39-DRB1*16:02-DQB1*03:01 | | Colombia Wayu from Guajira Peninsula | 1.0400 | | 48 |
|
43 | A*68-B*39-DRB1*16:02-DQB1*03:01 | | Colombia Wayu from Guajira Peninsula | 1.0400 | | 48 |
|
44 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Quintana Roo Rural | 1.0000 | | 50 |
|
45 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Baja California Rural | 1.0000 | | 50 |
|
46 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Oaxaca, Oaxaca city | 0.9934 | | 151 |
|
47 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Mexico City Metropolitan Area Rural | 0.9868 | | 150 |
|
48 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Sinaloa, Culiacán | 0.9709 | | 103 |
|
49 | A*31-B*39-DRB1*16-DQB1*03:01 | | Mexico Mexico City South | 0.9615 | | 52 |
|
50 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Puebla Rural | 0.9592 | | 833 |
|
51 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz, Coatzacoalcos | 0.8929 | | 55 |
|
52 | A*29-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz, Coatzacoalcos | 0.8929 | | 55 |
|
53 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Tlaxcala Rural | 0.8434 | | 830 |
|
54 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz Rural | 0.8318 | | 539 |
|
55 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz Rural | 0.8318 | | 539 |
|
56 | A*31-B*39-DRB1*16-DQB1*03:01 | | Mexico Chiapas Rural | 0.8264 | | 121 |
|
57 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Nuevo Leon Rural | 0.7955 | | 439 |
|
58 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Tamaulipas Rural | 0.7937 | | 125 |
|
59 | A*02:01-B*39:06-DRB1*16:02-DQB1*03:01 | | Chile Mapuche | 0.7700 | | 66 |
|
60 | A*68:16-B*39:09-DRB1*16:02-DQB1*03:01 | | Chile Mapuche | 0.7700 | | 66 |
|
61 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Yucatan Rural | 0.7463 | | 132 |
|
62 | A*68:03-B*39:05-C*07:02-DRB1*16:02-DQA1*05:05-DQB1*03:01 | | Mexico Tixcacaltuyub Maya | 0.7463 | | 67 |
|
63 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Puebla Rural | 0.7194 | | 833 |
|
64 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Tabasco Rural | 0.7042 | | 142 |
|
65 | A*02:01:01-B*39:01:01-C*07:01:01-DRB1*16:02:01-DQB1*03:01:01 | | Mexico Hidalgo Mezquital Valley/ Otomi | 0.6944 | | 72 |
|
66 | A*68:01:01-B*39:01:01-C*07:01:01-DRB1*16:02:01-DQB1*03:01:01 | | Mexico Hidalgo Mezquital Valley/ Otomi | 0.6944 | | 72 |
|
67 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Coahuila Rural | 0.6881 | | 216 |
|
68 | A*68:01-B*39:05-C*07:02-DRB1*16:02-DQA1*05:05-DQB1*03:01-DPA1*01:03-DPB1*04:02 | | Mexico Chiapas Lacandon Mayans | 0.6881 | | 218 |
|
69 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Mexico City North | 0.6640 | | 751 |
|
70 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Puebla Rural | 0.6595 | | 833 |
|
71 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Mexico City Center | 0.6494 | | 152 |
|
72 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz Rural | 0.6470 | | 539 |
|
73 | B*39:05-C*07:02-DRB1*16:02-DQB1*03:01 | | Mexico Mexico City Mestizo pop 2 | 0.6400 | | 234 |
|
74 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Mexico City East | 0.6250 | | 79 |
|
75 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Hidalgo Rural | 0.6173 | | 81 |
|
76 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Hidalgo Rural | 0.6173 | | 81 |
|
77 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Oaxaca Rural | 0.6160 | | 485 |
|
78 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Morelos, Cuernavaca | 0.6098 | | 82 |
|
79 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Zacatecas, Zacatecas city | 0.5952 | | 84 |
|
80 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Jalisco, Zapopan | 0.5952 | | 168 |
|
81 | A*24:02-B*39:01-DRB1*16:02-DQB1*03:01 | | Mexico Veracruz Xalapa | 0.5952 | | 84 |
|
82 | A*24:02-B*39:02-DRB1*16:02-DQB1*03:01 | | Mexico Veracruz Xalapa | 0.5952 | | 84 |
|
83 | A*31-B*39-DRB1*16-DQB1*03:01 | | Mexico Zacatecas, Zacatecas city | 0.5952 | | 84 |
|
84 | A*36-B*39:01-DRB1*16:02-DQB1*03:01 | | Mexico Veracruz Xalapa | 0.5952 | | 84 |
|
85 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Puebla, Puebla city | 0.5762 | | 1,994 |
|
86 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Puebla, Puebla city | 0.5762 | | 1,994 |
|
87 | A*31-B*39-DRB1*16-DQB1*03:01 | | Mexico Michoacan Rural | 0.5731 | | 348 |
|
88 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz, Xalapa | 0.5348 | | 187 |
|
89 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Veracruz, Xalapa | 0.5348 | | 187 |
|
90 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Yucatan, Merida | 0.5128 | | 192 |
|
91 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Yucatan, Merida | 0.5128 | | 192 |
|
92 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Zacatecas, Fresnillo | 0.4762 | | 103 |
|
93 | A*24-B*39-DRB1*16-DQB1*03:01 | | Mexico Chihuahua, Ciudad Juarez | 0.4630 | | 106 |
|
94 | A*68:03-B*39:05-C*07:02-DRB1*16:02-DQA1*05:05-DQB1*03:01-DPA1*01:03-DPB1*04:02 | | Mexico Chiapas Lacandon Mayans | 0.4587 | | 218 |
|
95 | A*68-B*39-DRB1*16-DQB1*03:01 | | Mexico Nuevo Leon, Monterrey city | 0.4425 | | 226 |
|
96 | B*39:02-C*07:02-DRB1*16:02-DQB1*03:01 | | Mexico Mexico City Mestizo pop 2 | 0.4300 | | 234 |
|
97 | A*02:01-B*39:05-C*07:02-DRB1*16:02-DQB1*03:01 | | Mexico Mexico City Mestizo pop 2 | 0.4274 | | 234 |
|
98 | A*68:01-B*39:02-C*07:02-DRB1*16:02-DQB1*03:01 | | Mexico Mexico City Mestizo pop 2 | 0.4274 | | 234 |
|
99 | A*02-B*39-DRB1*16-DQB1*03:01 | | Ecuador Coast Mixed Ancestry | 0.4202 | | 238 |
|
100 | A*02-B*39-DRB1*16-DQB1*03:01 | | Mexico Chihuahua Chihuahua City | 0.4202 | | 119 |
|
* Haplotype Frequencies: Total number of copies of the haplotype in the population sample (Haplotypes / 2n) shown in percentages (%).
: This field has been expanded to two decimals to better represent frequencies of large datasets (e.g. where sample size > 1000 individuals)
¹ Distribution - Shows the geographic distribution in overlaid maps of the complete haplotype (left icon) or the input alleles if low level resolution was entered (right icon).