HLA > Allele Frequency Search > Classical

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Displaying 1 to 6 (from 6) records   Pages: 1 of 1  

Line Allele Population % of individuals
that have the allele		 Allele
Frequency
(in_decimals)		 Sample
Size		 IMGT/HLA¹
Database		 Distribution² Haplotype³
Association		 Notesª
 1   A*02:01:01:01  Costa Rica Guaymi NA-DHS_10 (G) 5.6 (*) 0.0278 (*)18See
 2   A*02:22  Costa Rica Guaymi NA-DHS_10 (G) 83.3 (*) 0.4444 (*)18See
 3   A*24:02:01:01  Costa Rica Guaymi NA-DHS_10 (G) 72.2 (*) 0.3611 (*)18See
 4   A*30:01:01  Costa Rica Guaymi NA-DHS_10 (G) 5.6 (*) 0.0278 (*)18See
 5   A*31:01:02  Costa Rica Guaymi NA-DHS_10 (G) 11.1 (*) 0.0556 (*)18See
 6   A*68:01:02  Costa Rica Guaymi NA-DHS_10 (G) 16.7 (*) 0.0833 (*)18See

Notes:

* Allele Frequency: Total number of copies of the allele in the population sample (Alleles / 2n) in decimal format.
   Important: This field has been expanded to four decimals to better represent frequencies of large datasets (e.g. where sample size > 1000 individuals)
* % of individuals that have the allele: Percentage of individuals who have the allele in the population (Individuals / n).
* Allele Frequencies shown in green were calculated from Phenotype Frequencies assuming Hardy-Weinberg proportions.
   AF = 1-square_root(1-PF)
   PF = 1-(1-AF)2
   AF = Allele Frequency; PF = Phenotype Frequency, i.e. (%) of the individuals carrying the allele.
* Allele Frequencies marked with (*) were calculated from all alleles in the corresponding G group.

¹ IMGT/HLA Database - For more details of the allele.
² Distribution - Graphical distribution of the allele.
³ Haplotype Association - Find HLA haplotypes with this allele.
ª Notes - See notes for ambiguous combinations of alleles.







   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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