HLA > Allele Frequency Search > Classical

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Displaying 1 to 7 (from 7) records   Pages: 1 of 1  

Line Allele Population % of individuals
that have the allele		 Allele
Frequency
(in_decimals)		 Sample
Size		 IMGT/HLA¹
Database		 Distribution² Haplotype³
Association		 Notesª
 1   A*02:06:01  Costa Rica Cabecar NA-DHS_9 (G) 21.1 (*) 0.1053 (*)19See
 2   A*23:01  Costa Rica Cabecar NA-DHS_9 (G) 5.3 (*) 0.0263 (*)19See
 3   A*24:02:01:01  Costa Rica Cabecar NA-DHS_9 (G) 52.6 (*) 0.3421 (*)19See
 4   A*24:03:02  Costa Rica Cabecar NA-DHS_9 (G) 42.1 (*) 0.2632 (*)19See
 5   A*68:01:02  Costa Rica Cabecar NA-DHS_9 (G) 31.6 (*) 0.1579 (*)19See
 6   A*68:03:01  Costa Rica Cabecar NA-DHS_9 (G) 5.3 (*) 0.0263 (*)19See
 7   A*68:30  Costa Rica Cabecar NA-DHS_9 (G) 15.8 (*) 0.0789 (*)19See

Notes:

* Allele Frequency: Total number of copies of the allele in the population sample (Alleles / 2n) in decimal format.
   Important: This field has been expanded to four decimals to better represent frequencies of large datasets (e.g. where sample size > 1000 individuals)
* % of individuals that have the allele: Percentage of individuals who have the allele in the population (Individuals / n).
* Allele Frequencies shown in green were calculated from Phenotype Frequencies assuming Hardy-Weinberg proportions.
   AF = 1-square_root(1-PF)
   PF = 1-(1-AF)2
   AF = Allele Frequency; PF = Phenotype Frequency, i.e. (%) of the individuals carrying the allele.
* Allele Frequencies marked with (*) were calculated from all alleles in the corresponding G group.

¹ IMGT/HLA Database - For more details of the allele.
² Distribution - Graphical distribution of the allele.
³ Haplotype Association - Find HLA haplotypes with this allele.
ª Notes - See notes for ambiguous combinations of alleles.







   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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