 | | Russia Karelia | | Polymorphic Region: | HLA |
Demographic Data
|
| |
| |
Ethnic origin: |
Caucasoid |
| |
Geographic Region: |
North-East Asia |
| |
Latitude: |
63º 9' N
|
| |
Longitude: |
32º 59' E
|
| |
Family: |
Not Known |
| |
Urban/Rural: |
Urban and Rural |
Sample Data
|
| |
| |
Sample Size: |
1075
|
| |
Test date: |
2017 |
| |
Method(s): |
NGS
|
| |
Source: |
Bone Marrow Registry |
| |
Loci typed: |
A , B, C, DPB1, DQB1, DRB1
|
| |
Additional notes: |
The raw genotypes are analysed using our implementation of an EM algorithm (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5450239/ ) .
From this haplotype frequencies are calculated and hence allele frequencies
Only unresolved genotypes including their ambiguities was given No resolved genotypes were given
" Haplotype and allele data is available in the “g” notation in the supplementary information accompanying the publication in Human Immunology. However the trailing "g" is omitted on AFND due to AFND format restrictions."
The allele and haplotype frequency data are given at 2 field. However the allele name given should have "g" that is alleles are only defined to the "g" level For example frequency for A*24:02 is in fact frequency for A*24:02g |
| |
Bibliographic Reference
|
| |
| |
Author(s): |
Jürgen Sauter |
| |
Publication details: |
|
| |
Author's e-mail: |
sauter@dkms.de |
| |
Frequency Data
|
| |
|
|
Allele Frequencies
Genotype Data