Populations » Publication Details

Population: 
   

  

Russia Karelia

Polymorphic Region:
HLA

Demographic Data

 
  Ethnic origin:
  Geographic Region: North-East Asia
  Latitude: 63° 9' N
  Longitude: 32° 59' E
  Family: Not Known
  Urban/Rural: Urban and Rural

Sample Data

 
  Sample Size: 1075
  Test date: 2017
  Method(s): NGS
  Source: Bone Marrow Registry
  Loci typed: A, B, C, DPB1, DQB1, DRB1
  Additional notes: The raw genotypes are analysed using our implementation of an EM algorithm (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5450239/ ) . From this haplotype frequencies are calculated and hence allele frequencies Only unresolved genotypes including their ambiguities was given No resolved genotypes were given " Haplotype and allele data is available in the “g” notation in the supplementary information accompanying the publication in Human Immunology. However the trailing "g" is omitted on AFND due to AFND format restrictions." The allele and haplotype frequency data are given at 2 field. However the allele name given should have "g" that is alleles are only defined to the "g" level For example frequency for A*24:02 is in fact frequency for A*24:02g
 

Bibliographic Reference

 
  Author(s): Jürgen Sauter
  Publication details:
  Author's e-mail: sauter@dkms.de
 

Frequency Data

 
Allele Frequencies Haplotype Frequencies  Genotype Data
(download csv)
 




   

Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.
Gonzalez-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, Silva AL, Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR and Middleton D Nucleic Acid Research 2015, 39, 28, D784-8.
Liverpool, U.K.

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