Populations � Publication Details

Population: 
   

  

USA San Francisco Caucasian

Polymorphic Region:
HLA

Demographic Data

 
  Ethnic origin: Caucasoid
  Geographic Region: North America
  Latitude: 37� 46' N
  Longitude: 122� 25' W
  Family: Not Known
  Urban/Rural: Urban

Sample Data

 
  Sample Size: 220
  Test date: 2011
  Method(s): Sequencing, Other
  Source: Controls for Disease Study
  Loci typed: A, B, C, DPB1, DQA1, DQB1, DRB1, DRB3, DRB4, DRB5
  Additional notes: Tested by NGS To gain further insight into the role of HLA alleles in lymphomagenesis and to investigate the independence of validated SNPs and HLA alleles with follicular lymphoma risk, high-resolution HLA typing was conducted using next-generation sequencing in 222 non-Hispanic White FL cases and 220 matched controls from a larger San Francisco Bay Area population-based case-control study of lymphoma.
 

Bibliographic Reference

 
  Author(s): Christine Skibola
  Publication details: Skibola CF, Akers NK, Conde L, Ladner M, Hawbecker SK, Cohen F, Ribas F, Erlich HA, Goodridge D, Trachtenberg EA, Smith MT, Bracci PM. "Multi-locus HLA class I and II allele and haplotype associations with follicular lymphoma". Tissue antigens. 79(4):279-86, 2012.
  Author's e-mail: lconde@uab.edu
 

Frequency Data

 
Allele Frequencies Haplotype Frequencies 
 

License

 
 
 






Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.
Gonzalez-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, Silva AL, Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR and Middleton D Nucleic Acid Research 2015, 39, 28, D784-8.
Liverpool, U.K.

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