Populations Publication Details

Population: 
   

  

India Karnataka Kannada Speaking

Polymorphic Region:
HLA

Demographic Data

 
  Ethnic origin: Unspecified
  Geographic Region: South Asia
  Latitude: 12 57' N
  Longitude: 77 36' E
  Family: Not Known
  Urban/Rural: Urban

Sample Data

 
  Sample Size: 174
  Test date: 2018
  Method(s): NGS
  Source: Bone Marrow Registry
  Loci typed: A, B, C, DQB1, DRB1
  Additional notes: Allele frequencies at each HLA locus were evaluated for deviations from Hardy- Weinberg equilibrium proportions using a modified version of Guo and Thompson algorithm as implemented in Pypop 0.7.0. Haplotype frequencies were estimated using the itera
 

Bibliographic Reference

 
  Author(s): Vani Seshasubramanian, Nirmal Kumar Manisekar, Aruna Devi Sa
  Publication details: Vani Seshasubramanian, Nirmal Kumar Manisekar, Aruna Devi Sathishkannan, Chandramouleeswaran Naganathan, Yogesh Nandakumar and Saranya Narayan. Kannadigas from South India Extended haplotypes in Linkage disequilibrium in Kannadigas of South India. 2018. HLA. 92:193-195. doi: 10.1111/tan.13324.
  Author's e-mail: vani@jeevan.org
 

Frequency Data

 
Allele Frequencies Haplotype Frequencies 
 






Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.
Gonzalez-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, Silva AL, Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR and Middleton D Nucleic Acid Research 2015, 39, 28, D784-8.
Liverpool, U.K.

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