Populations � Publication Details

Population: 
   

  

Sri Lanka Colombo

Polymorphic Region:
HLA

Demographic Data

 
  Ethnic origin: Sinhalese, Tamil, Moor
  Geographic Region: South Asia
  Latitude: 6� 56' N
  Longitude: 79� 50' E
  Family: Not Known
  Urban/Rural: Urban

Sample Data

 
  Sample Size: 714
  Test date: 2017
  Method(s): Sequencing
  Source: Blood Donor
  Loci typed: A, B, C, DPB1, DQA1, DQB1, DRB1
  Additional notes: Deviations from Hardy Weinberg proportions were not detected at any locus. Several alleles were found in more than 30% of individuals, including the class II alleles DPB1*04:01, DPB1*02:01, DQB1*06:01 and DRB1*07:01, and the class I alleles A*33:03 a
 

Bibliographic Reference

 
  Author(s): Alba Grifoni
  Publication details: DNA sequence-based typing at the HLA- A, B, C, DPB1, DQA1, DQB1 and DRB1 loci was performed on anonymized samples from 714 healthy blood bank donors in Colombo, Sri Lanka.
  Author's e-mail: jsidney@lji.org
 

Frequency Data

 
Allele Frequencies Haplotype Frequencies  Genotype Data
(download csv)
 

License

 
 
Ambiguity-resolved Genotype Data
(download csv)
 






Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.
Gonzalez-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, Silva AL, Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR and Middleton D Nucleic Acid Research 2015, 39, 28, D784-8.
Liverpool, U.K.

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