Populations � Publication Details

Population: 
   

  

South Africa Worcester

Polymorphic Region:
HLA

Demographic Data

 
  Ethnic origin: Cape mixed ancestry, Afrikaans
  Geographic Region: Sub-Saharan Africa
  Latitude: 33� 39' S
  Longitude: 19� 27' E
  Family: Not Known
  Urban/Rural: Urban and Rural

Sample Data

 
  Sample Size: 159 (DPA1 = 61, DPB1 = 158, DQB1 = 158)
  Test date: 2014
  Method(s): Sequencing
  Source: Disease Study Patients
  Loci typed: A, B, C, DPA1, DPB1, DQA1, DQB1, DRB1
  Additional notes: DNA sequence-based typing at the HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, -DRB1, and -DRB3/4/5 loci was performed on samples provided by 159 individuals from the Worcester region of the Western Cape province of South Africa. The purpose of the stud
 

Bibliographic Reference

 
  Author(s): Cecilia S. Lindestam Arlehamn
  Publication details: Sequence-based HLA-A, -B, -C, -DP, -DQ and -DR typing of 159 individuals from the Worcester region of the Western Cape province of South Africa.
  Author's e-mail: cecilia@lji.org
 

Frequency Data

 
Allele Frequencies Haplotype Frequencies  Genotype Data
(download csv)
 

License

 
 
Ambiguity-resolved Genotype Data
(download csv)
 






Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.
Gonzalez-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, Silva AL, Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR and Middleton D Nucleic Acid Research 2015, 39, 28, D784-8.
Liverpool, U.K.

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