Populations � Publication Details

Population: 
   

  

India Tamil Nadu

Polymorphic Region:
HLA

Demographic Data

 
  Ethnic origin:
  Geographic Region: South Asia
  Latitude: 11� 32' N
  Longitude: 78� 52' E
  Family: Not Known
  Urban/Rural: Urban and Rural

Sample Data

 
  Sample Size: 2492
  Test date: 2012
  Method(s): SSOP, SBT
  Source: Bone Marrow Registry
  Loci typed: A, B, C, DQB1, DRB1
  Additional notes: HLA haplotype frequencies were estimated using an expectation maximization algorithm Allele frequencies were then calculated by direct counting from estimated haplotype frequencies Data was collapsed to g Groups as defined in the report from the Immunogenomics Data Analysis Working Group of the 16th International HLA and Immunogenetics Workshop (Int J Immunogenetics 2013,40,46-53) Genotypes were then given at one field but haplotype and allele frequencies at 2 field, although the alleles named in allele frequency and haplotype data should be suffixed with "g" for example frequency of 24:02 is the frequency of 24:02g
 

Bibliographic Reference

 
  Author(s): Saranya Narayan, Martin Maiers, Mike Halagan, Arunadevi Sat
  Publication details: HLA-A, -B, -C, -DRB1 and DQB1 haplotype frequencies from 2492 Cord Blood Units from Tamil speaking population from Tamil Nadu, India, Human Immunology short population report
  Author's e-mail: srinivasan@jeevan.org
 

Frequency Data

 
Allele Frequencies Haplotype Frequencies  Genotype Data
(download csv)
 

License

 
 
Ambiguity-resolved Genotype Data
(download csv)
 






Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.
Gonzalez-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, Silva AL, Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR and Middleton D Nucleic Acid Research 2015, 39, 28, D784-8.
Liverpool, U.K.

support@allelefrequencies.net


Valid XHTML 1.0 Transitional