Populations � Publication Details

Population: 
   

  

USA San Diego

Polymorphic Region:
HLA

Demographic Data

 
  Ethnic origin: European, Hispanic, Asian, Pacific Islander
  Geographic Region: North America
  Latitude: 32� 50' N
  Longitude: 117� 15' W
  Family: Not Known
  Urban/Rural: Urban

Sample Data

 
  Sample Size: 496 (A = 310, B = 312, C = 312, DPB1 = 495, DQA1 = 364, DQB1 = 493)
  Test date: 2017
  Method(s): SSP, SSOP, Sequencing, NGS
  Source: Blood Donor
  Loci typed: A, B, C, DPB1, DQA1, DQB1, DRB1
  Additional notes: Deviations from Hardy-Weinberg proportions were detected at each locus except A and C. Several alleles were found in more than 25% of individuals, including the Class II alleles DPB1*04:01, DPB1*02:01, DQA1*01:02, DQA1*05:01, and DQB1*03:01 and the C
 

Bibliographic Reference

 
  Author(s): Eugene Moore
  Publication details: Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 496 adults from San Diego, California, USA
  Author's e-mail: emoore@lji.org
 

Frequency Data

 
Allele Frequencies Haplotype Frequencies  Genotype Data
(download csv)
 

License

 
 
Ambiguity-resolved Genotype Data
(download csv)
 






Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.
Gonzalez-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, Silva AL, Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR and Middleton D Nucleic Acid Research 2015, 39, 28, D784-8.
Liverpool, U.K.

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