Allele Frequencies in World Populations

HLA Database Allele Report

The list below shows all populations in AFND that contains the allele. If an allele has an entry with a lower resolution this will be shown at the end.

Allele: 
   

B*39:01

 
Allele reported 246 time(s) and present in 225 population(s).

Population Phenotype
Frequency (%)
Allele
Frequency
(in_decimals)
Sample
Size
IMGT/HLA¹
Database
Distribution² Haplotype³
Association
Notesª
TWNTaiwan Saisiat82.40.549051See
TWNTaiwan Tsou43.10.245051See
USAUSA South Dakota Lakota Sioux0.2250302See
TWNTaiwan Taroko40.00.218055See
TWNTaiwan Atayal35.80.1980106See
PNGPapua New Guinea Wanigela Keapara0.167066See
JPNJapan Hokkaido Ainu0.160050See
TWNTaiwan Bunun28.70.1490101See
USAUSA New Mexico Canoncito Navajo0.146042See
TWNTaiwan Thao26.70.133030See
TWNTaiwan Rukai26.00.130050See
TWNTaiwan Ami19.40.102098See
NZLNew Zealand Maori with Admixed History18.10.0910105See
NZLNew Zealand Maori with Full Ancestry17.40.087046See
MYSMalaysia Perak Grik Jehai0.080025See
USAUSA Hawaii Okinawa0.0770106See
RUSRussia Bering Island Aleut0.076085See
NZLNew Zealand Polynesians with Full Ancestry14.30.071021See
PNGPapua New Guinea Wosera Abelam0.0700131See
CHLChile Mapuches0.0694104See
CHLMapuche0.069266See
PNGPapua New Guinea Madang0.064065See
MEXMexico Oaxaca Mixtec0.0590103See
NZLNew Zealand Polynesians with Admixed History11.10.056027See
USAUSA Arizona Gila River Amerindian0.0510492See
TWNTaiwan Puyuma10.00.050050See
TWNTaiwan Paiwan7.80.049051See
NCLNew Caledonia0.048065See
JPNJapan Central0.0440371See
USAUSA North American Native0.0400187See
ASMAmerican Samoa0.040051See
SDNSudan East Rashaida7.40.037727See
RUSRussia Karelia0.03701075See
ARGArgentina Gran Chaco Western Toba Pilaga7.10.036019See
TWNTaiwan Hakka7.30.036055See
AUSAustralia Cape York Peninsula Aborigine0.0350103See
SWESweden Northern Sami0.0350154See
JPNJapan pop 50.0350117See
JPNJapan pop 30.03401018See
USAUSA NMDP North American Amerindian0.033935791See
JPNJapan pop 160.033218604See
PRTPortugal North0.033046See
COLColombia North Chimila Amerindians0.031947See
CHNChina Han HIV negative0.031072See
CHNChina Henan HIV negative0.031016See
USAUSA NMDP Japanese0.030324582See
PHLPhilippines Ivatan6.00.030050See
IRNIran Gorgan0.029069See
CHNChina Sichuan HIV negative0.029034See
BRABrazil Mixed0.0290108See
COLColombia North Wiwa El Encanto0.028852See
GEOGeorgia Tibilisi0.0280109See
TWNTaiwan Tzu Chi Cord Blood Bank0.0280710See
CHNChina Guangxi Region Maonan0.0280108See
PRTPortugal Azores Terceira Island5.30.0263130See
CHNChina Uyghur HIV negative0.026019See
CHNChina Yunnan Province Nu0.0260107See
TWNTaiwan pop 30.0260212See
CHNChina Guizhou Province Bouyei0.0260109See
GRCGreece pop 60.0259242See
HRVCroatia pop 40.02564000See
TWNTaiwan Han Chinese0.0250504See
THAThailand0.0250142See
PRTAzores Terceira Island0.0240130See
SGPSingapore Chinese4.70.0240149See
NLDNetherlands UMCU4.70.023464See
USAUSA San Francisco Caucasian0.0230220See
ROMRomania4.60.0230348See
POLPoland0.0230200See
DEUGermany DKMS - Bosnia and Herzegovina minority0.02241028See
CHNChina Yunnan Province Lisu0.0220111See
ARGArgentina Gran Chaco Eastern Toba3.50.0220135See
AUSAustralia Yuendumu Aborigine0.0210191See
MARMorocco Settat Chaouya4.20.021098See
USAUSA Asian0.0210358See
MARMorocco Atlantic Coast Chaouya0.021098See
TWNTaiwan pop 20.0210364See
DEUGermany DKMS - Croatia minority0.02042057See
DEUGermany DKMS - Greece minority0.02031894See
MYSMalaysia Kedah Baling Kensiu0.020025See
TWNTaiwan Minnan pop 13.90.0200102See
HRVCroatia0.0200150See
CHNChina Guangzhou0.0200102See
USAUSA NMDP Chinese0.019399672See
DEUGermany DKMS - China minority0.01911282See
MYSMalaysia Mandailing3.70.019027See
GEOGeorgia Svaneti Region Svan0.019080See
CHNChina Beijing Shijiazhuang Tianjian Han0.0190618See
USAUSA Caucasian Bethesda3.80.0190307See
PNGPapua New Guinea Karimui Plateau Pawaia0.019080See
USAUSA Hispanic0.0190234See
FRAFrance Southeast3.80.0190130See
HKGHong Kong Chinese BMDR0.01827595See
DEUGermany DKMS - Italy minority0.01811159See
PRTAzores Central Islands0.018059See
ESPSpain Andalusia0.018099See
CHESwitzerland Basel0.01801888See
TWNTaiwan Pazeh3.60.018055See
DEUGermany DKMS - Romania minority0.01781234See
CHESwitzerland St Gallen0.01772113See
DEUGermany DKMS - France minority0.01741406See
CHESwitzerland Lausanne0.0170993See
BRABrazil Terena1.70.017060See
HKGHong Kong Chinese cord blood registry0.01703892See
UGAUganda Kampala0.0160161See
USAUSA African American0.0160252See
ITAItaly pop 50.0160975See
DEUGermany DKMS - Netherlands minority0.01571374See
POLPoland DKMS0.015720653See
MYSMalaysia Peninsular Chinese3.10.0155194See
DEUGermany DKMS - Austria minority0.01531698See
USAUSA European American pop 20.01501245See
ESPSpain Andalusia Gipsy0.015099See
SGPSingapore Thai0.0150100See
SRBSerbia pop 22.90.0150102See
ARMArmenia combined Regions0.0150100See
MEXMexico Oaxaca Zapotec0.015090See
USAUSA NMDP Korean0.014677584See
CHESwitzerland Lugano0.01441169See
CHNChina Jiangsu Province Han0.0143334See
KORSouth Korea pop 100.01414128See
NLDNetherlands Leiden0.01401305See
CHNChina Jiangsu Han0.01403238See
CHNChina Guangzhou Han0.0140106See
PRTMadeira0.0140185See
HKGHong Kong Chinese2.80.0140569See
CZECzech Republic0.0140106See
DEUGermany pop 60.01418862See
PERPeru Titikaka Lake Uro0.0140105See
CHNChina Qinghai Province Hui0.0140110See
PERPeru Titikaka Lake Uros0.0140105See
DEUGermany pop 80.013839689See
ISRIsrael Argentina Jews0.01354307See
USAUSA Asian pop 20.01331772See
CHNChina Canton Han0.0130264See
CHNChina Tibet Region Tibetan0.0130158See
AUSAustralia Kimberly Aborigine0.013041See
CHNChina Yunnan Bulang0.0130116See
ISRIsrael USSR Jews0.012745681See
DEUGermany DKMS - Turkey minority0.01264856See
DEUGermany DKMS - United Kingdom minority0.01251043See
GRCGreece pop 82.40.012183See
CUBCuba Mulatto2.40.012042See
CHNChina Guizhou Province Miao pop 20.012085See
SGPSingapore Chinese Han0.012094See
VNMVietnam Hanoi Kinh pop 20.0120170See
CZECzech Republic NMDR0.01185099See
CHESwitzerland Zurich0.01164875See
USAUSA NMDP European Caucasian0.01121242890See
AUSAustralia New South Wales Caucasian0.0110134See
FINFinland0.011091See
USAUSA NMDP Filipino0.010750614See
MEXMexico Mexico City Mestizo pop 20.0107234See
CHESwitzerland Aargau-Solothurn0.01011838See
TWNTaiwan Siraya2.00.010051See
PRTPortugal South0.010049See
KORSouth Korea pop 30.0100485See
USAUSA Hispanic pop 20.01001999See
USAUSA Eastern European0.0100558See
INDIndia Andhra Pradesh Golla0.0100111See
JORJordan Amman0.0100146See
IRLIreland South2.00.0100250See
USAUSA San Diego1.90.0100496See
USAUSA NMDP Middle Eastern or North Coast of Africa0.009870890See
AREUnited Arab Emirates Abu Dhabi0.009652See
DEUGermany DKMS - Portugal minority0.00941176See
NIRIreland Northern1.80.00901000See
MEXMexico Oaxaca Mixe0.009055See
USAUSA NMDP Vietnamese0.008743540See
CHESwitzerland Bern0.00863545See
USAUSA NMDP Mexican or Chicano0.0082261235See
RUSRussia Tuva pop 20.0080169See
CHNChina Beijing0.008067See
LKASri Lanka Colombo1.70.0080714See
AUTAustria1.50.0080200See
CHNChina Southwest Dai0.0080124See
NICNicaragua Managua1.20.0075339See
USAUSA NMDP Southeast Asian0.007427978See
USAUSA NMDP Caribean Hispanic0.0074115374See
USAUSA NMDP Hispanic South or Central American0.0073146714See
INDIndia Tamil Nadu0.00722492See
DEUGermany DKMS - Spain minority0.00721107See
ENGEngland North West1.30.0070298See
CHNChina Guizhou Province Shui0.0070153See
USAUSA Caucasian pop 40.00651070See
MYSMalaysia Peninsular Malay1.30.0063951See
KENKenya Luo0.0060265See
ZAFSouth Africa Worcester1.00.0060159See
ISRIsrael Tunisia Jews0.00609070See
CHESwitzerland Luzern0.00571553See
USAUSA NMDP South Asian Indian0.0055185391See
MEXMexico Mixtec0.005097See
CHNChina North Han0.0050105See
ISRIsrael Ashkenazi and Non Ashkenazi Jews0.0050146See
INDIndia Delhi pop 21.10.005090See
CHNChina Inner Mongolia Region0.0050102See
ISRIsrael Kavkazi Jews0.00492840See
USAUSA African American pop 40.00422411See
CHNChina Yunnan Province Wa0.0040119See
SWESweden Southern Sami0.0040130See
USAUSA Philadelphia Caucasian0.70.0040141See
USAUSA Caucasian pop 20.0040265See
USAUSA South Texas Hispanic0.0040194See
ISRIsrael Iraq Jews0.003913270See
USAUSA NMDP African American0.0032416581See
USAUSA San Antonio Caucasian0.0030222See
USAUSA African American pop 30.0030564See
USAUSA African American pop 80.0030605See
SAUSaudi Arabia Guraiat and Hail0.50.0020213See
CHESwitzerland Graubunden0.0020759See
USAUSA NMDP African0.001828557See
USAUSA NMDP Caribean Black0.001833328See
ISRIsrael Arab0.001712301See
ISRIsrael Libya Jews0.00163739See
ISRIsrael Poland Jews0.001413871See
CHESwitzerland Sion0.0013832See
CHESwitzerland Geneva pop 20.00121267See
ISRIsrael USA Jews0.00126058See
ISRIsrael Iran Jews0.00078153See
ISRIsrael Ashkenazi Jews0.00064625See
ISRIsrael Georgia Jews0.00064471See
ISRIsrael Morocco Jews0.000536718See
ISRIsrael Bukhara Jews0.00042317See
ISRIsrael YemenJews0.000315542See
ISRIsrael Druze0.00035914See
THAThailand pop 30.000049See
PRTAzores Oriental Islands0.000043See
CHNChina Yunnan Province Jinuo0.0000109See
ZAFSouth Africa Natal Zulu0.00.0000100See
CUBCuba Caucasian0.00.000070See
MEXMexico Mestizo0.00.000041See
OMNOman0.00.0000118See
BRABrazil Belo Horizonte Caucasian0.00.000095See
TWNTaiwan Tao0.00.000050See
PNGPapua New Guinea Eastern Highlands Goroka Asaro0.000057See
PNGPapua New Guinea East New Britain Rabaul0.000060See
PNGPapua New Guinea West Schrader Ranges Haruai0.000055See
ARGArgentina Gran Chaco Mataco Wichi0.00.000049See
AUSAustralia Groote Eylandt Aborigine0.000075See
USAUSA African American Bethesda0.00.0000187See
USAUSA Alaska Yupik0.0000252See
PRTPortugal Center0.000050See
MLIMali Bandiagara0.0000138See
KENKenya Nandi0.0000240See
ZMBZambia Lusaka0.000044See
MARMorocco Nador Metalsa pop 20.000073See

Frequency data at lower resolution for this allele can be found in links below


Allele  Number of Populations 

Notes:

* Allele Frequency: Total number of copies of the allele in the population sample (Alleles / 2n) in decimal format.
   Important: This field has been expanded to four decimals to better represent frequencies of large datasets (e.g. where sample size > 1000 individuals)
* Phenotype Frequency: Percentage of individuals who have the allele or gene (Individuals / n).
* Allele Frequencies shown in green were calculated from Phenotype Frequencies assuming Hardy-Weinberg proportions.

¹ IMGT/HLA Database - For more details of the allele.
² Distribution - Graphical distribution of the allele.
³ Haplotype Association - Find HLA haplotypes with this allele.
ª Notes - See notes for ambiguous combinations of alleles.




Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.
Gonzalez-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, Silva AL, Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR and Middleton D Nucleic Acid Research 2015, 39, 28, D784-8.
Liverpool, U.K.

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